SFmap Motifs List

Splicing Factor Motifs
SF2ASF crsmsgw, ugrwgvh
9G8 acgagagay, wggacra
SC35 gryymcyr, ugcygyy
Tra2alpha gaagaggaag
Tra2beta gaagaa, ghvvganr, aaguguu
SRp20 cuckucy, wcwwc
SRp40 yywcwsg
SRp55 yrcrkm
hnRNPA1 guaguagu, rgnyag
hnRNPA2B1 gguaguag, aggwuhgr
hnRNPF gukgykg, gugkau, gggug
hnRNPH1 gargag
hnRNPM gguugguu
hnRNPU uguauug
MBNL ygcuky
NOVA1 ycay
PTB cucucu, ucuu
CUG-BP ugcug
YB1 caaccacaa
FOX1 ugcaug
QK1 acuaay

The splicing factors and their related motifs were extracted from the literature and are based on experimental data.
For references, read: Akerman et al., 2009.